Protein : Qrob_P0002810.2 Q. robur
Protein Identifier  ? Qrob_P0002810.2 Organism . Name  Quercus robur
Score  32.3 Score Type  egn
Protein Description  (M=2) PTHR31471:SF5 - F7A19.1 PROTEIN-RELATED (PTHR31471:SF5) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 379  
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0 Synonyms

0 GO Terms

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103321507 35 378 + 344 Gaps:35 96.96 329 54.86 9e-84 uncharacterized protein At3g61260-like
blastp_kegg lcl|mdm:103414288 35 378 + 344 Gaps:40 96.93 326 53.48 2e-80 remorin-like
blastp_kegg lcl|mdm:103451780 35 378 + 344 Gaps:40 96.93 326 53.48 2e-80 remorin-like
blastp_kegg lcl|pxb:103947229 35 378 + 344 Gaps:38 96.95 328 52.52 2e-76 uncharacterized protein At3g61260
blastp_kegg lcl|pper:PRUPE_ppa017471mg 66 378 + 313 Gaps:34 100.00 293 54.27 9e-76 hypothetical protein
blastp_kegg lcl|fve:101293779 35 378 + 344 Gaps:46 97.63 338 48.48 2e-73 uncharacterized protein LOC101293779
blastp_kegg lcl|cic:CICLE_v10033969mg 35 378 + 344 Gaps:33 97.32 373 44.90 5e-69 hypothetical protein
blastp_kegg lcl|cit:102616806 35 378 + 344 Gaps:63 97.52 403 41.98 6e-63 hepatoma-derived growth factor-related protein 2-like
blastp_kegg lcl|pop:POPTR_0010s16830g 35 378 + 344 Gaps:66 96.84 316 49.67 4e-59 POPTRDRAFT_566956 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1621620 35 378 + 344 Gaps:51 96.76 340 45.59 1e-56 DNA binding protein putative
blastp_uniprot_sprot sp|Q9M2D8|Y3126_ARATH 277 378 + 102 Gaps:1 48.58 212 32.04 1e-06 Uncharacterized protein At3g61260 OS Arabidopsis thaliana GN At3g61260 PE 1 SV 1
rpsblast_cdd gnl|CDD|190741 271 375 + 105 none 93.75 112 39.05 3e-16 pfam03763 Remorin_C Remorin C-terminal region. Remorins are plant-specific plasma membrane-associated proteins. In tobacco remorin co-purifies with lipid rafts. Most remorins have a variable proline-rich C-half and a more conserved N-half that is predicted to form coiled coils. Consistent with this circular dichroism studies have demonstrated that much of the protein is alpha-helical. Remorins exist in plasma membrane preparations as oligomeric structures and form filaments in vitro. The proteins can bind polyanions including the extracellular matrix component oligogalacturonic acid (OGA). In vitro remorin in plasma membrane preparations is phosphorylated (principally on threonine residues) in the presence of OGA and thus co-purifies with a protein kinases(s). The biological functions of remorins are unknown but roles as components of the membrane/cytoskeleton are possible.

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 282 325 44 Coil none none none
PANTHER 30 377 348 PTHR31471:SF5 none none none
Pfam 270 375 106 PF03763 none Remorin, C-terminal region IPR005516
PANTHER 30 377 348 PTHR31471 none none none

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting