Protein : Qrob_P0001530.2 Q. robur
Protein Identifier  ? Qrob_P0001530.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR22880:SF145 - TYROSINE-PROTEIN KINASE BAZ1B (PTHR22880:SF145) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1733  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103326752 1 1718 + 1718 Gaps:120 99.76 1678 61.23 0.0 uncharacterized LOC103326752
blastp_kegg lcl|pxb:103946970 1 1718 + 1718 Gaps:157 99.76 1665 59.90 0.0 uncharacterized LOC103946970
blastp_kegg lcl|pxb:103930870 1 1718 + 1718 Gaps:157 99.76 1665 59.84 0.0 uncharacterized LOC103930870
blastp_kegg lcl|mdm:103426921 1 1718 + 1718 Gaps:171 99.76 1657 60.31 0.0 uncharacterized LOC103426921
blastp_kegg lcl|mdm:103421895 1 1718 + 1718 Gaps:141 99.76 1671 59.27 0.0 uncharacterized LOC103421895
blastp_kegg lcl|pper:PRUPE_ppa000168mg 145 1718 + 1574 Gaps:103 99.74 1545 62.36 0.0 hypothetical protein
blastp_kegg lcl|pxb:103929546 1 1718 + 1718 Gaps:157 99.76 1657 59.35 0.0 uncharacterized LOC103929546
blastp_kegg lcl|tcc:TCM_040802 1 1714 + 1714 Gaps:110 87.52 1931 57.93 0.0 DNA binding zinc ion binding DNA binding putative isoform 1
blastp_kegg lcl|vvi:100260139 1 1705 + 1705 Gaps:222 85.68 1976 56.53 0.0 uncharacterized LOC100260139
blastp_kegg lcl|cic:CICLE_v10014020mg 1 1732 + 1732 Gaps:168 93.70 1761 57.94 0.0 hypothetical protein
blastp_pdb 1mm3_A 679 731 + 53 none 86.89 61 41.51 2e-08 mol:protein length:61 Mi2-beta(Chromodomain helicase-DNA-binding pr
blastp_pdb 2l5u_A 678 731 + 54 Gaps:1 86.89 61 43.40 4e-07 mol:protein length:61 Chromodomain-helicase-DNA-binding protein 4
blastp_pdb 2ke1_A 686 731 + 46 none 69.70 66 47.83 9e-07 mol:protein length:66 Autoimmune regulator
blastp_pdb 1xwh_A 686 731 + 46 none 69.70 66 47.83 9e-07 mol:protein length:66 Autoimmune regulator
blastp_pdb 2kft_A 686 731 + 46 none 82.14 56 47.83 2e-06 mol:protein length:56 Autoimmune regulator
blastp_uniprot_sprot sp|Q12830|BPTF_HUMAN 479 784 + 306 Gaps:74 8.73 3046 29.32 3e-18 Nucleosome-remodeling factor subunit BPTF OS Homo sapiens GN BPTF PE 1 SV 3
blastp_uniprot_sprot sp|Q9W0T1|NU301_DROME 480 784 + 305 Gaps:58 9.85 2669 29.66 7e-17 Nucleosome-remodeling factor subunit NURF301 OS Drosophila melanogaster GN E(bx) PE 1 SV 2
blastp_uniprot_sprot sp|O97159|CHDM_DROME 679 732 + 54 none 4.84 1982 47.92 7e-09 Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS Drosophila melanogaster GN Mi-2 PE 1 SV 2
blastp_uniprot_sprot sp|Q14839|CHD4_HUMAN 667 732 + 66 Gaps:3 6.01 1912 40.87 3e-08 Chromodomain-helicase-DNA-binding protein 4 OS Homo sapiens GN CHD4 PE 1 SV 2
blastp_uniprot_sprot sp|Q6PDQ2|CHD4_MOUSE 667 774 + 108 Gaps:15 6.58 1915 42.86 3e-08 Chromodomain-helicase-DNA-binding protein 4 OS Mus musculus GN Chd4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ULU4|PKCB1_HUMAN 690 731 + 42 Gaps:2 3.37 1186 52.50 4e-08 Protein kinase C-binding protein 1 OS Homo sapiens GN ZMYND8 PE 1 SV 2
blastp_uniprot_sprot sp|G5EBZ4|LE418_CAEEL 679 731 + 53 Gaps:2 2.79 1829 50.98 1e-07 Protein let-418 OS Caenorhabditis elegans GN let-418 PE 1 SV 1
blastp_uniprot_sprot sp|Q96QT6|PHF12_HUMAN 686 737 + 52 Gaps:2 5.38 1004 44.44 2e-07 PHD finger protein 12 OS Homo sapiens GN PHF12 PE 1 SV 2
blastp_uniprot_sprot sp|Q5SPL2|PHF12_MOUSE 686 737 + 52 Gaps:2 5.38 1003 44.44 2e-07 PHD finger protein 12 OS Mus musculus GN Phf12 PE 1 SV 1
blastp_uniprot_sprot sp|Q22516|CHD3_CAEEL 661 738 + 78 Gaps:2 7.39 1787 36.36 3e-07 Chromodomain-helicase-DNA-binding protein 3 homolog OS Caenorhabditis elegans GN chd-3 PE 2 SV 2
rpsblast_cdd gnl|CDD|201356 690 731 + 42 Gaps:5 92.16 51 44.68 1e-08 pfam00628 PHD PHD-finger. PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3.
rpsblast_cdd gnl|CDD|197604 690 731 + 42 Gaps:4 97.87 47 41.30 2e-08 smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the RING finger and the FYVE finger. It is not yet known if PHD fingers have a common molecular function. Several reports suggest that it can function as a protein-protein interacton domain and it was recently demonstrated that the PHD finger of p300 can cooperate with the adjacent BROMO domain in nucleosome binding in vitro. Other reports suggesting that the PHD finger is a ubiquitin ligase have been refuted as these domains were RING fingers misidentified as PHD fingers.
rpsblast_cdd gnl|CDD|202398 494 550 + 57 none 93.44 61 33.33 4e-07 pfam02791 DDT DDT domain. This domain is approximately 60 residues in length and is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is exclusively associated with nuclear domains and is thought to be arranged into three alpha helices.
rpsblast_kog gnl|CDD|36686 479 1282 + 804 Gaps:162 55.45 1414 27.30 2e-33 KOG1473 KOG1473 KOG1473 Nucleosome remodeling factor subunit NURF301/BPTF [Chromatin structure and dynamics Transcription].
rpsblast_kog gnl|CDD|35604 677 731 + 55 none 7.90 696 34.55 4e-07 KOG0383 KOG0383 KOG0383 Predicted helicase [General function prediction only].

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 687 734 48 PS50016 none Zinc finger PHD-type profile. IPR019787
SUPERFAMILY 683 744 62 SSF57903 none none IPR011011
PANTHER 978 1452 475 PTHR22880:SF145 none none none
ProSitePatterns 690 731 42 PS01359 none Zinc finger PHD-type signature. IPR019786
PANTHER 978 1452 475 PTHR22880 none none none
Pfam 690 732 43 PF00628 none PHD-finger IPR019787
PANTHER 679 948 270 PTHR22880:SF145 none none none
Gene3D 684 737 54 G3DSA:3.30.40.10 none none IPR013083
SMART 689 732 44 SM00249 none PHD zinc finger IPR001965
SMART 1625 1674 50 SM00249 none PHD zinc finger IPR001965
ProSiteProfiles 491 551 61 PS50827 none DDT domain profile. IPR018501
Gene3D 1626 1678 53 G3DSA:3.30.40.10 none none IPR013083
PANTHER 383 637 255 PTHR22880 none none none
SMART 491 551 61 SM00571 none domain in different transcription and chromosome remodeling factors IPR018500
PANTHER 383 637 255 PTHR22880:SF145 none none none
Coils 55 76 22 Coil none none none
Pfam 494 550 57 PF02791 none DDT domain IPR004022
SUPERFAMILY 1625 1681 57 SSF57903 none none IPR011011
Pfam 606 640 35 PF15612 none WSTF, HB1, Itc1p, MBD9 motif 1 IPR028942
PANTHER 679 948 270 PTHR22880 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting