Protein : Qrob_P0001490.2 Q. robur
Protein Identifier  ? Qrob_P0001490.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=5) PTHR31636:SF13 - SCARECROW-LIKE PROTEIN 3 (PTHR31636:SF13) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 474  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0000989 transcription factor binding transcription factor activity Interacting selectively and non-covalently with a specific transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_040833 4 473 + 470 Gaps:2 100.00 470 87.66 0.0 Scarecrow-like 3
blastp_kegg lcl|pmum:103326777 1 473 + 473 Gaps:1 100.00 474 83.76 0.0 scarecrow-like protein 3
blastp_kegg lcl|pper:PRUPE_ppa005243mg 4 473 + 470 Gaps:1 100.00 471 83.23 0.0 hypothetical protein
blastp_kegg lcl|pxb:103929549 1 473 + 473 Gaps:1 100.00 474 81.86 0.0 scarecrow-like protein 3
blastp_kegg lcl|pxb:103946973 4 473 + 470 Gaps:1 100.00 471 82.17 0.0 scarecrow-like protein 3
blastp_kegg lcl|pxb:103930868 4 473 + 470 Gaps:1 100.00 471 81.95 0.0 scarecrow-like protein 3
blastp_kegg lcl|vvi:100253019 7 473 + 467 Gaps:1 99.79 469 82.91 0.0 scarecrow-like protein 3-like
blastp_kegg lcl|mdm:103413164 1 473 + 473 Gaps:1 100.00 474 81.22 0.0 scarecrow-like protein 3
blastp_kegg lcl|pop:POPTR_0009s05330g 4 473 + 470 Gaps:2 100.00 470 81.28 0.0 POPTRDRAFT_804493 scarecrow-like transcription factor 3 family protein
blastp_kegg lcl|gmx:100814131 1 473 + 473 Gaps:5 100.00 476 77.31 0.0 scarecrow-like protein 3-like
blastp_uniprot_sprot sp|Q9LPR8|SCL3_ARATH 1 473 + 473 Gaps:9 100.00 482 69.29 0.0 Scarecrow-like protein 3 OS Arabidopsis thaliana GN SCL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9S7H5|SCL21_ARATH 52 470 + 419 Gaps:62 87.41 413 38.23 3e-63 Scarecrow-like protein 21 OS Arabidopsis thaliana GN SCL21 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ST48|DWRF8_MAIZE 40 470 + 431 Gaps:101 61.90 630 36.41 5e-63 DELLA protein DWARF8 OS Zea mays GN D8 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C8Y3|RGL1_ARATH 40 473 + 434 Gaps:73 71.82 511 38.69 8e-62 DELLA protein RGL1 OS Arabidopsis thaliana GN RGL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LDL7|PAT1_ARATH 53 470 + 418 Gaps:64 75.10 490 34.51 1e-61 Scarecrow-like transcription factor PAT1 OS Arabidopsis thaliana GN PAT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q7G7J6|SLR1_ORYSJ 42 470 + 429 Gaps:93 62.08 625 36.86 2e-61 DELLA protein SLR1 OS Oryza sativa subsp. japonica GN SLR1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8W127|SLN1_HORVU 42 470 + 429 Gaps:93 63.43 618 36.48 5e-61 DELLA protein SLN1 OS Hordeum vulgare GN SLN1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M384|SCR_ARATH 37 472 + 436 Gaps:69 57.43 653 38.67 2e-60 Protein SCARECROW OS Arabidopsis thaliana GN SCR PE 1 SV 1
blastp_uniprot_sprot sp|Q9ST59|RHT1_WHEAT 40 470 + 431 Gaps:94 63.40 623 36.20 1e-59 DELLA protein RHT-1 OS Triticum aestivum GN RHT1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9AVK4|SCR_PEA 56 470 + 415 Gaps:68 43.10 819 38.53 1e-58 Protein SCARECROW OS Pisum sativum GN SCR PE 2 SV 1
rpsblast_cdd gnl|CDD|202673 49 470 + 422 Gaps:66 100.00 372 46.51 1e-115 pfam03514 GRAS GRAS family transcription factor. Sequence analysis of the products of the GRAS (GAI RGA SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect loss of a ground tissue layer in the root. The PAT1 protein is involved in phytochrome A signal transduction.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 321 473 153 PTHR31636:SF13 none none IPR030008
ProSiteProfiles 23 450 428 PS50985 none GRAS family profile. IPR005202
PANTHER 321 473 153 PTHR31636 none none none
PANTHER 10 267 258 PTHR31636:SF13 none none IPR030008
PANTHER 10 267 258 PTHR31636 none none none
Pfam 49 470 422 PF03514 none GRAS domain family IPR005202

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting