Protein : Qrob_P0001330.2 Q. robur
Protein Identifier  ? Qrob_P0001330.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR12811 - VACUOLAR PROTEIN SORTING VPS16 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 430  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0007033 vacuole organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vacuole.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103328922 1 429 + 429 none 51.01 841 91.84 0.0 protein VACUOLELESS1
blastp_kegg lcl|gmx:100817661 1 427 + 427 none 50.65 843 92.74 0.0 vacuolar protein sorting-associated protein 16 homolog
blastp_kegg lcl|pper:PRUPE_ppa001364mg 1 429 + 429 none 50.83 844 91.61 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_001991 1 429 + 429 Gaps:14 50.69 874 90.07 0.0 Vacuoleless1 (VCL1) isoform 1
blastp_kegg lcl|vvi:100260824 1 424 + 424 none 50.60 838 93.40 0.0 vacuolar protein sorting-associated protein 16 homolog-like
blastp_kegg lcl|gmx:100812079 1 427 + 427 none 50.65 843 91.80 0.0 vacuolar protein sorting-associated protein 16 homolog
blastp_kegg lcl|cam:101498618 1 429 + 429 none 50.47 850 90.91 0.0 vacuolar protein sorting-associated protein 16 homolog
blastp_kegg lcl|cic:CICLE_v10030701mg 1 429 + 429 none 51.13 839 91.14 0.0 hypothetical protein
blastp_kegg lcl|cit:102617306 1 429 + 429 none 51.13 839 91.14 0.0 vacuolar protein sorting-associated protein 16 homolog
blastp_kegg lcl|pvu:PHAVU_006G022400g 1 427 + 427 none 50.65 843 90.63 0.0 hypothetical protein
blastp_uniprot_sprot sp|Q55C58|VPS16_DICDI 1 409 + 409 Gaps:17 48.32 832 43.03 2e-89 Vacuolar protein sorting-associated protein 16 homolog OS Dictyostelium discoideum GN vps16 PE 3 SV 2
blastp_uniprot_sprot sp|Q920Q4|VPS16_MOUSE 1 420 + 420 Gaps:18 48.87 839 36.83 3e-65 Vacuolar protein sorting-associated protein 16 homolog OS Mus musculus GN Vps16 PE 1 SV 3
blastp_uniprot_sprot sp|Q9H269|VPS16_HUMAN 1 395 + 395 Gaps:17 46.01 839 38.08 2e-62 Vacuolar protein sorting-associated protein 16 homolog OS Homo sapiens GN VPS16 PE 1 SV 2
blastp_uniprot_sprot sp|Q5E9L7|VPS16_BOVIN 1 395 + 395 Gaps:17 46.01 839 37.82 3e-62 Vacuolar protein sorting-associated protein 16 homolog OS Bos taurus GN VPS16 PE 2 SV 1
blastp_uniprot_sprot sp|Q9UT38|VPS16_SCHPO 1 410 + 410 Gaps:23 48.98 835 30.32 4e-49 Probable vacuolar protein sorting-associated protein 16 homolog OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN vps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q03308|VPS16_YEAST 2 395 + 394 Gaps:39 48.50 798 26.36 4e-18 Vacuolar protein sorting-associated protein 16 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN VPS16 PE 1 SV 2
blastp_uniprot_sprot sp|Q11182|VPS16_CAEEL 3 399 + 397 Gaps:40 46.13 852 24.43 4e-14 Vacuolar protein sorting-associated protein 16 homolog OS Caenorhabditis elegans GN vps-16 PE 3 SV 2
blastp_uniprot_sprot sp|Q60V75|VPS16_CAEBR 3 395 + 393 Gaps:53 44.99 858 27.20 7e-14 Vacuolar protein sorting-associated protein 16 homolog OS Caenorhabditis briggsae GN vps-16 PE 3 SV 1
rpsblast_cdd gnl|CDD|113606 94 402 + 309 Gaps:14 93.10 319 33.67 1e-50 pfam04840 Vps16_C Vps16 C-terminal region. This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting which is essential for viability in plants but not yeast. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport. The role of VPS16 in this complex is not known.
rpsblast_kog gnl|CDD|37491 1 421 + 421 Gaps:36 50.30 829 39.09 1e-102 KOG2280 KOG2280 KOG2280 Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking secretion and vesicular transport].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 429 429 PTHR12811:SF0 none none IPR016534
PANTHER 1 429 429 PTHR12811 none none none
Pfam 94 404 311 PF04840 none Vps16, C-terminal region IPR006925

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting