Protein : Qrob_P0001310.2 Q. robur
Protein Identifier  ? Qrob_P0001310.2 Organism . Name  Quercus robur
Score  95.1 Score Type  egn
Protein Description  (M=2) PTHR12811 - VACUOLAR PROTEIN SORTING VPS16 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 376  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0007033 vacuole organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vacuole.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0005s22610g 1 375 + 375 Gaps:8 43.48 844 71.93 0.0 POPTRDRAFT_761155 MANGLED family protein
blastp_kegg lcl|cmo:103503053 1 375 + 375 Gaps:12 43.48 844 71.66 0.0 protein VACUOLELESS1
blastp_kegg lcl|csv:101224650 1 375 + 375 Gaps:12 43.48 844 71.66 0.0 vacuolar protein sorting-associated protein 16 homolog
blastp_kegg lcl|csv:101215770 1 375 + 375 Gaps:12 43.48 844 71.66 0.0 vacuolar protein sorting-associated protein 16 homolog
blastp_kegg lcl|pop:POPTR_0002s05890g 1 375 + 375 Gaps:8 43.48 844 72.21 0.0 POPTRDRAFT_754365 MANGLED family protein
blastp_kegg lcl|vvi:100260824 1 375 + 375 Gaps:13 43.44 838 74.73 0.0 vacuolar protein sorting-associated protein 16 homolog-like
blastp_kegg lcl|sot:102604066 1 375 + 375 Gaps:13 43.36 844 72.13 0.0 vacuolar protein sorting-associated protein 16 homolog
blastp_kegg lcl|sly:101250423 1 375 + 375 Gaps:13 43.42 843 72.40 0.0 vacuolar protein sorting-associated protein 16 homolog
blastp_kegg lcl|cam:101498618 1 375 + 375 Gaps:18 43.88 850 70.78 0.0 vacuolar protein sorting-associated protein 16 homolog
blastp_kegg lcl|mtr:MTR_3g046640 1 375 + 375 Gaps:18 43.57 856 70.51 0.0 Vacuolar protein sorting-associated protein-like protein
blastp_uniprot_sprot sp|Q55C58|VPS16_DICDI 6 372 + 367 Gaps:24 43.63 832 35.54 3e-64 Vacuolar protein sorting-associated protein 16 homolog OS Dictyostelium discoideum GN vps16 PE 3 SV 2
blastp_uniprot_sprot sp|Q9H269|VPS16_HUMAN 8 368 + 361 Gaps:39 42.67 839 32.96 4e-42 Vacuolar protein sorting-associated protein 16 homolog OS Homo sapiens GN VPS16 PE 1 SV 2
blastp_uniprot_sprot sp|Q5E9L7|VPS16_BOVIN 8 368 + 361 Gaps:39 42.67 839 32.96 2e-41 Vacuolar protein sorting-associated protein 16 homolog OS Bos taurus GN VPS16 PE 2 SV 1
blastp_uniprot_sprot sp|Q920Q4|VPS16_MOUSE 8 368 + 361 Gaps:43 42.67 839 32.96 7e-41 Vacuolar protein sorting-associated protein 16 homolog OS Mus musculus GN Vps16 PE 1 SV 3
blastp_uniprot_sprot sp|Q9UT38|VPS16_SCHPO 9 365 + 357 Gaps:21 42.16 835 29.83 2e-35 Probable vacuolar protein sorting-associated protein 16 homolog OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN vps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q03308|VPS16_YEAST 211 367 + 157 Gaps:10 20.43 798 27.61 4e-12 Vacuolar protein sorting-associated protein 16 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN VPS16 PE 1 SV 2
rpsblast_cdd gnl|CDD|113607 8 367 + 360 Gaps:28 85.78 408 28.57 1e-45 pfam04841 Vps16_N Vps16 N-terminal region. This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting which is essential for viability in plants but not yeast. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport. The role of VPS16 in this complex is not known.
rpsblast_kog gnl|CDD|37491 1 375 + 375 Gaps:15 43.67 829 42.27 1e-101 KOG2280 KOG2280 KOG2280 Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking secretion and vesicular transport].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 375 375 PTHR12811 none none none
Gene3D 69 169 101 G3DSA:2.130.10.10 none none IPR015943
Gene3D 228 283 56 G3DSA:2.130.10.10 none none IPR015943
SUPERFAMILY 61 300 240 SSF50969 none none IPR011044
PANTHER 1 375 375 PTHR12811:SF0 none none IPR016534
Pfam 8 367 360 PF04841 none Vps16, N-terminal region IPR006926

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting