Protein : Qrob_P0001150.2 Q. robur
Protein Identifier  ? Qrob_P0001150.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=162) PF01535//PF13041 - PPR repeat // PPR repeat family Gene Prediction Quality  validated
Protein length 

Sequence

Length: 491  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100246628 8 487 + 480 Gaps:197 96.83 694 63.10 0.0 pentatricopeptide repeat-containing protein At5g27110-like
blastp_kegg lcl|cit:102612538 8 486 + 479 Gaps:269 99.57 694 63.39 0.0 pentatricopeptide repeat-containing protein At5g27110-like
blastp_kegg lcl|pxb:103933421 8 486 + 479 Gaps:191 97.14 699 57.29 0.0 pentatricopeptide repeat-containing protein At5g27110
blastp_kegg lcl|pmum:103327205 8 487 + 480 Gaps:226 99.71 694 59.97 0.0 pentatricopeptide repeat-containing protein At5g27110
blastp_kegg lcl|pper:PRUPE_ppa015027mg 8 468 + 461 Gaps:220 99.39 660 60.52 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10014446mg 8 469 + 462 Gaps:191 92.77 705 59.33 0.0 hypothetical protein
blastp_kegg lcl|mdm:103407895 8 486 + 479 Gaps:193 98.00 699 56.93 0.0 pentatricopeptide repeat-containing protein At5g27110-like
blastp_kegg lcl|fve:101306493 4 487 + 484 Gaps:258 98.29 703 58.32 0.0 pentatricopeptide repeat-containing protein At5g27110-like
blastp_kegg lcl|pvu:PHAVU_006G027400g 8 480 + 473 Gaps:191 94.72 701 58.73 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_040952 8 482 + 475 Gaps:248 96.45 704 59.79 0.0 Tetratricopeptide repeat-like superfamily protein
blastp_uniprot_sprot sp|O04659|PP398_ARATH 8 480 + 473 Gaps:202 98.84 691 51.98 6e-158 Pentatricopeptide repeat-containing protein At5g27110 OS Arabidopsis thaliana GN PCMP-E14 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SIT7|PP151_ARATH 8 480 + 473 Gaps:125 90.24 697 32.91 2e-79 Pentatricopeptide repeat-containing protein At2g13600 OS Arabidopsis thaliana GN PCMP-E76 PE 3 SV 1
blastp_uniprot_sprot sp|P0C898|PP232_ARATH 3 474 + 472 Gaps:126 80.26 689 37.07 5e-78 Putative pentatricopeptide repeat-containing protein At3g15130 OS Arabidopsis thaliana GN PCMP-H86 PE 3 SV 1
blastp_uniprot_sprot sp|Q7Y211|PP285_ARATH 8 482 + 475 Gaps:216 77.98 890 41.07 2e-75 Pentatricopeptide repeat-containing protein At3g57430 chloroplastic OS Arabidopsis thaliana GN PCMP-H81 PE 2 SV 2
blastp_uniprot_sprot sp|Q3E6Q1|PPR32_ARATH 3 480 + 478 Gaps:217 82.20 809 40.90 1e-74 Pentatricopeptide repeat-containing protein At1g11290 OS Arabidopsis thaliana GN PCMP-H40 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LIC3|PP227_ARATH 8 488 + 481 Gaps:140 79.94 628 46.41 2e-74 Putative pentatricopeptide repeat-containing protein At3g13770 mitochondrial OS Arabidopsis thaliana GN PCMP-H85 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SMZ2|PP347_ARATH 1 474 + 474 Gaps:235 81.72 990 38.94 8e-74 Pentatricopeptide repeat-containing protein At4g33170 OS Arabidopsis thaliana GN PCMP-H53 PE 3 SV 1
blastp_uniprot_sprot sp|Q9STE1|PP333_ARATH 8 485 + 478 Gaps:239 87.05 857 42.76 2e-73 Pentatricopeptide repeat-containing protein At4g21300 OS Arabidopsis thaliana GN PCMP-E36 PE 3 SV 1
blastp_uniprot_sprot sp|Q7XJN6|PP197_ARATH 6 480 + 475 Gaps:249 96.40 860 36.55 2e-72 Pentatricopeptide repeat-containing protein At2g40720 OS Arabidopsis thaliana GN PCMP-E26 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SVA5|PP357_ARATH 8 473 + 466 Gaps:323 90.89 834 45.91 3e-72 Pentatricopeptide repeat-containing protein At4g39530 OS Arabidopsis thaliana GN PCMP-E52 PE 1 SV 1
rpsblast_cdd gnl|CDD|178626 8 464 + 457 Gaps:171 72.70 857 40.45 6e-69 PLN03077 PLN03077 Protein ECB2 Provisional.
rpsblast_cdd gnl|CDD|178630 6 476 + 471 Gaps:229 75.90 697 42.91 2e-59 PLN03081 PLN03081 pentatricopeptide (PPR) repeat-containing protein Provisional.
rpsblast_cdd gnl|CDD|205222 33 81 + 49 none 98.00 50 34.69 4e-09 pfam13041 PPR_2 PPR repeat family. This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
rpsblast_cdd gnl|CDD|178757 29 440 + 412 Gaps:120 30.19 1060 28.44 9e-08 PLN03218 PLN03218 maturation of RBCL 1 Provisional.

29 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 33 80 48 PF13041 none PPR repeat family IPR002885
Gene3D 11 142 132 G3DSA:1.25.40.10 none none IPR011990
Gene3D 341 437 97 G3DSA:1.25.40.10 none none IPR011990
ProSiteProfiles 68 104 37 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 410 437 28 PF01535 none PPR repeat IPR002885
Pfam 110 134 25 PF01535 none PPR repeat IPR002885
Pfam 344 366 23 PF01535 none PPR repeat IPR002885
Pfam 180 202 23 PF01535 none PPR repeat IPR002885
Phobius 1 18 18 SIGNAL_PEPTIDE none Signal peptide region none
ProSiteProfiles 33 67 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 2 32 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
TIGRFAM 36 68 33 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
SUPERFAMILY 355 428 74 SSF48452 none none none
SUPERFAMILY 13 57 45 SSF48452 none none none
ProSiteProfiles 175 209 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 8 135 128 PTHR24015 none none none
PANTHER 164 482 319 PTHR24015 none none none
ProSiteProfiles 340 374 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 407 441 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 105 135 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Phobius 1 1 1 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 19 490 472 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 14 18 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
ProSiteProfiles 269 303 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 225 259 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 304 339 36 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 164 482 319 PTHR24015:SF291 none none none
PANTHER 8 135 128 PTHR24015:SF291 none none none
Phobius 2 13 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

1 Localization

Analysis Start End Length
SignalP_EUK 1 18 17

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 18   Secretory pathway 2 0.921 0.036 NON-PLANT 18