Protein : Qrob_P0001060.2 Q. robur
Protein Identifier  ? Qrob_P0001060.2 Organism . Name  Quercus robur
Score  93.2 Score Type  egn
Protein Description  (M=8) PTHR22763:SF3 - gb def: Hypothetical protein T5P19_230 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 174  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_040980 11 147 + 137 Gaps:4 99.30 142 53.19 5e-37 hypothetical protein
blastp_kegg lcl|vvi:100852487 11 161 + 151 Gaps:5 92.59 162 40.00 1e-28 E3 ubiquitin-protein ligase RNF181-like
blastp_kegg lcl|cit:102617047 11 169 + 159 Gaps:26 98.79 165 42.94 2e-28 putative RING-H2 finger protein ATL21C-like
blastp_kegg lcl|cit:102616457 11 169 + 159 Gaps:13 93.83 162 41.45 5e-28 E3 ubiquitin-protein ligase RNF181-like
blastp_kegg lcl|cic:CICLE_v10017481mg 11 170 + 160 Gaps:26 99.39 165 41.46 5e-27 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0834190 34 166 + 133 Gaps:5 87.34 158 43.48 1e-25 zinc finger protein putative
blastp_kegg lcl|fve:101295848 111 170 + 60 none 47.62 126 46.67 2e-14 E3 ubiquitin-protein ligase RING1-like
blastp_kegg lcl|aly:ARALYDRAFT_908763 114 170 + 57 none 14.84 384 49.12 3e-14 zinc finger family protein
blastp_kegg lcl|eus:EUTSA_v10013909mg 112 170 + 59 none 16.30 362 49.15 7e-14 hypothetical protein
blastp_kegg lcl|pxb:103965827 111 170 + 60 none 38.96 154 48.33 1e-13 E3 ubiquitin-protein ligase RING1-like
blastp_pdb 1iym_A 115 164 + 50 Gaps:1 92.73 55 47.06 2e-09 mol:protein length:55 EL5
blastp_pdb 2ect_A 117 161 + 45 none 57.69 78 48.89 3e-08 mol:protein length:78 RING finger protein 126
blastp_pdb 2ep4_A 119 164 + 46 none 62.16 74 41.30 1e-06 mol:protein length:74 RING finger protein 24
blastp_pdb 1x4j_A 114 161 + 48 none 64.00 75 37.50 8e-06 mol:protein length:75 RING finger protein 38
blastp_pdb 2l0b_A 111 161 + 51 Gaps:5 61.54 91 37.50 9e-06 mol:protein length:91 E3 ubiquitin-protein ligase Praja-1
blastp_uniprot_sprot sp|Q9VE61|RN181_DROME 120 165 + 46 none 31.29 147 47.83 8e-11 E3 ubiquitin-protein ligase RNF181 homolog OS Drosophila melanogaster GN CG7694 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SPL2|CIP8_ARATH 119 170 + 52 none 15.57 334 44.23 9e-11 E3 ubiquitin-protein ligase CIP8 OS Arabidopsis thaliana GN CIP8 PE 1 SV 1
blastp_uniprot_sprot sp|O22255|ATL64_ARATH 103 165 + 63 Gaps:2 28.63 227 47.69 1e-10 RING-H2 finger protein ATL64 OS Arabidopsis thaliana GN ATL64 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GUU2|RIE1_ARATH 94 164 + 71 Gaps:1 19.50 359 37.14 4e-10 E3 ubiquitin protein ligase RIE1 OS Arabidopsis thaliana GN RIE1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DIP3|RN126_XENTR 117 161 + 45 none 14.47 311 53.33 8e-10 E3 ubiquitin-protein ligase RNF126 OS Xenopus tropicalis GN rnf126 PE 2 SV 1
blastp_uniprot_sprot sp|Q6IRP0|R126B_XENLA 117 161 + 45 none 14.42 312 53.33 8e-10 RING finger protein 126-B OS Xenopus laevis GN rnf126-b PE 2 SV 1
blastp_uniprot_sprot sp|Q9M2S6|SDIR1_ARATH 115 165 + 51 none 18.68 273 45.10 2e-09 E3 ubiquitin-protein ligase SDIR1 OS Arabidopsis thaliana GN SDIR1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LZJ6|ATL5_ARATH 120 165 + 46 Gaps:1 18.29 257 53.19 2e-09 RING-H2 finger protein ATL5 OS Arabidopsis thaliana GN ATL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q10R93|RMR1_ORYSJ 52 161 + 110 Gaps:14 20.64 533 34.55 2e-09 Receptor homology region transmembrane domain- and RING domain-containing protein 1 OS Oryza sativa subsp. japonica GN Os03g0167500 PE 2 SV 1
blastp_uniprot_sprot sp|Q7T0Q3|R126A_XENLA 117 161 + 45 none 14.42 312 53.33 3e-09 RING finger protein 126-A OS Xenopus laevis GN rnf126-a PE 2 SV 1
rpsblast_cdd gnl|CDD|205816 119 161 + 43 none 93.48 46 46.51 3e-11 pfam13639 zf-RING_2 Ring finger domain.
rpsblast_cdd gnl|CDD|205013 95 161 + 67 Gaps:14 100.00 73 31.51 4e-08 pfam12678 zf-rbx1 RING-H2 zinc finger. There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein of which this domain is the conserved region participates in diverse functions relevant to chromosome metabolism and cell cycle control.
rpsblast_cdd gnl|CDD|29102 120 164 + 45 Gaps:3 97.78 45 43.18 7e-07 cd00162 RING RING-finger (Really Interesting New Gene) domain a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C probably involved in mediating protein-protein interactions identified in a proteins with a wide range of functions such as viral replication signal transduction and development has two variants the C3HC4-type and a C3H2C3-type (RING-H2 finger) which have different cysteine/histidine pattern a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H).
rpsblast_cdd gnl|CDD|35099 105 164 + 60 Gaps:3 16.84 374 28.57 9e-07 COG5540 COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification protein turnover chaperones].
rpsblast_kog gnl|CDD|39828 109 161 + 53 Gaps:1 15.52 348 37.04 9e-10 KOG4628 KOG4628 KOG4628 Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 120 161 42 PS50089 none Zinc finger RING-type profile. IPR001841
SMART 120 160 41 SM00184 none Ring finger IPR001841
Pfam 119 161 43 PF13639 none Ring finger domain IPR001841
SUPERFAMILY 113 167 55 SSF57850 none none none
PANTHER 115 164 50 PTHR22763:SF3 none none none
PANTHER 115 164 50 PTHR22763 none none none
Gene3D 115 164 50 G3DSA:3.30.40.10 none none IPR013083

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting