Protein : Qrob_P0000940.2 Q. robur
Protein Identifier  ? Qrob_P0000940.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=52) PF01535//PF13041//PF14432 - PPR repeat // PPR repeat family // DYW family of nucleic acid deaminases Gene Prediction Quality  validated
Protein length 

Sequence

Length: 757  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_025256 35 756 + 722 Gaps:8 95.21 752 68.85 0.0 Tetratricopeptide-like helical putative isoform 1
blastp_kegg lcl|vvi:100265089 55 756 + 702 Gaps:4 69.44 1008 68.86 0.0 putative pentatricopeptide repeat-containing protein At3g23330-like
blastp_kegg lcl|gmx:102664309 12 756 + 745 Gaps:9 99.47 756 64.23 0.0 putative pentatricopeptide repeat-containing protein At3g23330-like
blastp_kegg lcl|pper:PRUPE_ppa002768mg 56 756 + 701 Gaps:107 100.00 635 78.11 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_008G054600g 16 756 + 741 Gaps:5 98.81 755 63.14 0.0 hypothetical protein
blastp_kegg lcl|gmx:102659979 10 756 + 747 Gaps:5 97.54 771 63.16 0.0 pentatricopeptide repeat-containing protein At2g22070-like
blastp_kegg lcl|cam:101506933 54 756 + 703 Gaps:1 93.25 755 65.20 0.0 pentatricopeptide repeat-containing protein At2g22070-like
blastp_kegg lcl|mtr:MTR_7g079860 46 756 + 711 Gaps:71 95.23 755 67.59 0.0 Pentatricopeptide repeat-containing protein
blastp_kegg lcl|cmo:103485889 25 756 + 732 Gaps:3 72.23 1012 61.70 0.0 putative pentatricopeptide repeat-containing protein At3g23330
blastp_kegg lcl|pmum:103318879 1 650 + 650 Gaps:17 97.73 662 68.01 0.0 putative pentatricopeptide repeat-containing protein At3g23330
blastp_uniprot_sprot sp|Q9SHZ8|PP168_ARATH 56 756 + 701 Gaps:128 99.62 786 53.13 6e-174 Pentatricopeptide repeat-containing protein At2g22070 OS Arabidopsis thaliana GN PCMP-H41 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LW63|PP251_ARATH 7 756 + 750 Gaps:31 97.34 715 40.37 8e-165 Putative pentatricopeptide repeat-containing protein At3g23330 OS Arabidopsis thaliana GN PCMP-H32 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SVP7|PP307_ARATH 25 756 + 732 Gaps:273 93.80 1064 52.00 1e-159 Pentatricopeptide repeat-containing protein At4g13650 OS Arabidopsis thaliana GN PCMP-H42 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LNU6|PPR53_ARATH 57 756 + 700 Gaps:23 95.13 760 34.44 1e-158 Pentatricopeptide repeat-containing protein At1g20230 OS Arabidopsis thaliana GN PCMP-H21 PE 2 SV 2
blastp_uniprot_sprot sp|Q9CAA8|PP108_ARATH 56 756 + 701 Gaps:234 97.04 743 52.15 1e-158 Putative pentatricopeptide repeat-containing protein At1g68930 OS Arabidopsis thaliana GN PCMP-H22 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LFL5|PP390_ARATH 18 756 + 739 Gaps:96 95.18 850 42.03 2e-158 Pentatricopeptide repeat-containing protein At5g16860 OS Arabidopsis thaliana GN PCMP-H92 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SMZ2|PP347_ARATH 30 756 + 727 Gaps:286 94.75 990 49.79 1e-157 Pentatricopeptide repeat-containing protein At4g33170 OS Arabidopsis thaliana GN PCMP-H53 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LN01|PPR21_ARATH 22 756 + 735 Gaps:45 99.87 741 36.22 4e-156 Pentatricopeptide repeat-containing protein At1g08070 OS Arabidopsis thaliana GN PCMP-H12 PE 2 SV 1
blastp_uniprot_sprot sp|O82380|PP175_ARATH 56 756 + 701 Gaps:72 93.36 738 44.56 1e-155 Pentatricopeptide repeat-containing protein At2g29760 chloroplastic OS Arabidopsis thaliana GN PCMP-H33 PE 2 SV 1
blastp_uniprot_sprot sp|Q3E6Q1|PPR32_ARATH 56 756 + 701 Gaps:146 95.55 809 46.44 2e-155 Pentatricopeptide repeat-containing protein At1g11290 OS Arabidopsis thaliana GN PCMP-H40 PE 2 SV 1
rpsblast_cdd gnl|CDD|178626 5 754 + 750 Gaps:213 93.70 857 50.44 1e-135 PLN03077 PLN03077 Protein ECB2 Provisional.
rpsblast_cdd gnl|CDD|178630 45 756 + 712 Gaps:141 87.52 697 47.87 1e-132 PLN03081 PLN03081 pentatricopeptide (PPR) repeat-containing protein Provisional.
rpsblast_cdd gnl|CDD|206598 622 746 + 125 Gaps:23 100.00 116 43.97 5e-18 pfam14432 DYW_deaminase DYW family of nucleic acid deaminases. A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria plants Naegleria and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions which are independent lateral transfers contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.
rpsblast_cdd gnl|CDD|178757 292 570 + 279 Gaps:39 23.11 1060 36.73 1e-12 PLN03218 PLN03218 maturation of RBCL 1 Provisional.

39 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 56 207 152 PTHR24015:SF75 none none none
Pfam 99 146 48 PF13041 none PPR repeat family IPR002885
Pfam 349 395 47 PF13041 none PPR repeat family IPR002885
Pfam 449 496 48 PF13041 none PPR repeat family IPR002885
ProSiteProfiles 200 234 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 418 448 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 586 620 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Gene3D 351 476 126 G3DSA:1.25.40.10 none none IPR011990
Gene3D 580 608 29 G3DSA:1.25.40.10 none none IPR011990
Gene3D 179 276 98 G3DSA:1.25.40.10 none none IPR011990
TIGRFAM 451 485 35 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 102 134 33 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 306 333 28 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 486 519 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 234 262 29 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 350 375 26 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
PANTHER 290 756 467 PTHR24015 none none none
PANTHER 290 756 467 PTHR24015:SF75 none none none
Phobius 287 756 470 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 301 335 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Phobius 1 267 267 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 383 417 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 99 133 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 449 483 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 632 746 115 PF14432 none DYW family of nucleic acid deaminases none
Pfam 174 199 26 PF01535 none PPR repeat IPR002885
Pfam 306 333 28 PF01535 none PPR repeat IPR002885
Pfam 202 227 26 PF01535 none PPR repeat IPR002885
Pfam 423 444 22 PF01535 none PPR repeat IPR002885
Pfam 234 262 29 PF01535 none PPR repeat IPR002885

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 18   Mitochondrion 4 0.279 0.530 NON-PLANT 18