Protein : Qrob_P0000930.2 Q. robur
Protein Identifier  ? Qrob_P0000930.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=3) PTHR12608 - TRANSMEMBRANE PROTEIN HTP-1 RELATED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 423  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa009453mg 1 422 + 422 Gaps:15 95.89 292 76.43 6e-67 hypothetical protein
blastp_kegg lcl|pmum:103318787 1 422 + 422 Gaps:15 95.89 292 76.43 9e-66 GDT1-like protein 3
blastp_kegg lcl|mtr:MTR_7g079850 1 422 + 422 Gaps:6 95.42 284 78.23 6e-65 Transmembrane protein
blastp_kegg lcl|tcc:TCM_025257 26 422 + 397 Gaps:14 89.08 293 78.54 2e-60 Uncharacterized protein isoform 1
blastp_kegg lcl|pda:103712282 49 422 + 374 Gaps:2 83.51 291 81.89 2e-60 GDT1-like protein 4
blastp_kegg lcl|pop:POPTR_0013s08460g 312 422 + 111 none 98.23 113 87.39 4e-60 hypothetical protein
blastp_kegg lcl|mus:103986442 16 360 + 345 Gaps:9 55.00 380 72.73 1e-59 GDT1-like protein 4
blastp_kegg lcl|cam:101506596 1 422 + 422 Gaps:3 95.47 287 75.55 2e-58 GDT1-like protein 3-like
blastp_kegg lcl|gmx:100786634 1 422 + 422 Gaps:3 93.77 289 75.28 2e-58 putative pentatricopeptide repeat-containing protein At3g23330-like
blastp_kegg lcl|eus:EUTSA_v10004689mg 1 422 + 422 Gaps:7 95.95 296 71.13 4e-58 hypothetical protein
blastp_uniprot_sprot sp|A2YXC7|GDT14_ORYSI 39 422 + 384 Gaps:6 86.48 281 79.01 3e-56 GDT1-like protein 4 OS Oryza sativa subsp. indica GN OsI_29993 PE 3 SV 1
blastp_uniprot_sprot sp|Q6ZIB9|GDT14_ORYSJ 39 422 + 384 Gaps:6 86.17 282 79.01 3e-56 GDT1-like protein 4 OS Oryza sativa subsp. japonica GN Os08g0528500 PE 2 SV 1
blastp_uniprot_sprot sp|Q93Y38|GDT13_ARATH 1 422 + 422 Gaps:14 95.90 293 70.46 6e-56 GDT1-like protein 3 OS Arabidopsis thaliana GN At5g36290 PE 2 SV 1
blastp_uniprot_sprot sp|Q2R4J1|GDT13_ORYSJ 29 422 + 394 Gaps:4 90.68 279 75.49 7e-55 GDT1-like protein 3 OS Oryza sativa subsp. japonica GN Os11g0472500 PE 2 SV 1
blastp_uniprot_sprot sp|A2ZE50|GDT13_ORYSI 29 422 + 394 Gaps:4 90.68 279 75.49 7e-55 GDT1-like protein 3 OS Oryza sativa subsp. indica GN OsI_36063 PE 3 SV 1
blastp_uniprot_sprot sp|Q9HC07|TM165_HUMAN 76 421 + 346 Gaps:9 70.99 324 45.22 8e-27 Transmembrane protein 165 OS Homo sapiens GN TMEM165 PE 1 SV 1
blastp_uniprot_sprot sp|P52875|TM165_MOUSE 76 421 + 346 Gaps:2 64.71 323 46.41 5e-26 Transmembrane protein 165 OS Mus musculus GN Tmem165 PE 2 SV 2
blastp_uniprot_sprot sp|Q4V899|TM165_RAT 76 421 + 346 Gaps:2 70.90 323 43.67 5e-26 Transmembrane protein 165 OS Rattus norvegicus GN Tmem165 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SX28|GDT15_ARATH 78 420 + 343 Gaps:1 81.58 228 50.54 4e-24 GDT1-like protein 5 OS Arabidopsis thaliana GN At1g68650 PE 2 SV 1
blastp_uniprot_sprot sp|P52876|Y615_SYNY3 78 418 + 341 Gaps:2 88.35 206 50.00 1e-23 GDT1-like protein sll0615 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN sll0615 PE 3 SV 1
rpsblast_cdd gnl|CDD|32302 72 418 + 347 Gaps:2 95.26 190 39.23 2e-18 COG2119 COG2119 Predicted membrane protein [Function unknown].
rpsblast_cdd gnl|CDD|201637 82 412 + 331 Gaps:4 100.00 78 60.26 9e-18 pfam01169 UPF0016 Uncharacterized protein family UPF0016. This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions.
rpsblast_kog gnl|CDD|38092 16 421 + 406 Gaps:7 89.12 294 49.24 8e-36 KOG2881 KOG2881 KOG2881 Predicted membrane protein [Function unknown].

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 113 136 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 107 112 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 82 157 76 PF01169 none Uncharacterized protein family UPF0016 IPR001727
Pfam 338 412 75 PF01169 none Uncharacterized protein family UPF0016 IPR001727
Phobius 329 348 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 81 106 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 137 147 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 166 328 163 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 32 80 49 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 10 10 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 31 31 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 368 388 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 389 399 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 420 422 3 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 68 186 119 PTHR12608 none none IPR001727
PANTHER 295 421 127 PTHR12608 none none IPR001727
Phobius 400 419 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 349 367 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 11 26 16 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 148 165 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 27 31 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none

10 Localization

Analysis Start End Length
TMHMM 401 420 19
TMHMM 329 351 22
SignalP_GRAM_POSITIVE 1 31 30
SignalP_GRAM_NEGATIVE 1 31 30
TMHMM 75 94 19
SignalP_EUK 1 31 30
TMHMM 114 136 22
TMHMM 12 31 19
TMHMM 146 165 19
TMHMM 366 388 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 31   Secretory pathway 1 0.934 0.119 NON-PLANT 31