Protein : Qrob_P0000720.2 Q. robur
Protein Identifier  ? Qrob_P0000720.2 Organism . Name  Quercus robur
Score  76.3 Score Type  egn
Protein Description  (M=2) K02836 - peptide chain release factor RF-2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 218  
Kegg Orthology  K02836
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0006415 translational termination The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
GO:0016149 translation release factor activity, codon specific A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100265078 20 198 + 179 Gaps:14 36.78 454 80.84 2e-80 peptide chain release factor 2-like
blastp_kegg lcl|rcu:RCOM_1077620 8 198 + 191 Gaps:13 38.86 458 73.60 8e-80 peptide chain release factor putative
blastp_kegg lcl|pop:POPTR_0008s07570g 17 198 + 182 Gaps:19 37.55 466 77.14 2e-78 POPTRDRAFT_1084675 hypothetical protein
blastp_kegg lcl|pmum:103318815 11 198 + 188 Gaps:14 38.60 456 73.86 5e-78 putative peptide chain release factor 1 mitochondrial
blastp_kegg lcl|cit:102615234 18 198 + 181 Gaps:13 36.52 460 77.98 1e-77 peptide chain release factor 1 mitochondrial-like
blastp_kegg lcl|cmo:103487209 10 198 + 189 Gaps:13 38.85 453 71.59 1e-75 peptide chain release factor 1 mitochondrial
blastp_kegg lcl|tcc:TCM_025105 20 198 + 179 Gaps:21 36.87 537 67.17 1e-75 High chlorophyll fluorescent 109 isoform 1
blastp_kegg lcl|gmx:100775574 10 198 + 189 Gaps:15 39.04 456 71.35 6e-75 peptide chain release factor 2-like
blastp_kegg lcl|fve:101310537 20 198 + 179 Gaps:17 35.53 456 77.16 5e-74 peptide chain release factor 2-like
blastp_kegg lcl|pxb:103932476 20 198 + 179 Gaps:13 36.48 455 71.69 2e-72 peptide chain release factor 1 mitochondrial-like
blastp_pdb 2b9m_Y 64 217 + 154 Gaps:16 41.64 365 26.32 7e-07 mol:protein length:365 Peptide chain release factor 2
blastp_pdb 2x9t_Y 71 217 + 147 Gaps:16 41.31 351 26.21 5e-06 mol:protein length:351 PEPTIDE CHAIN RELEASE FACTOR 2
blastp_pdb 2x9r_Y 71 217 + 147 Gaps:16 41.31 351 26.21 5e-06 mol:protein length:351 PEPTIDE CHAIN RELEASE FACTOR 2
blastp_pdb 2wh3_Y 71 217 + 147 Gaps:16 41.31 351 26.21 5e-06 mol:protein length:351 PEPTIDE CHAIN RELEASE FACTOR 2
blastp_pdb 2wh1_Y 71 217 + 147 Gaps:16 41.31 351 26.21 5e-06 mol:protein length:351 PEPTIDE CHAIN RELEASE FACTOR 2
blastp_uniprot_sprot sp|P74476|RF2_SYNY3 54 198 + 145 Gaps:2 38.44 372 39.86 5e-23 Peptide chain release factor 2 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN prfB PE 3 SV 2
blastp_uniprot_sprot sp|B7K0A6|RF2_CYAP8 61 198 + 138 Gaps:4 37.26 365 41.91 5e-21 Peptide chain release factor 2 OS Cyanothece sp. (strain PCC 8801) GN prfB PE 3 SV 1
blastp_uniprot_sprot sp|Q7U3W6|RF2_SYNPX 57 198 + 142 Gaps:8 37.43 374 39.29 5e-18 Peptide chain release factor 2 OS Synechococcus sp. (strain WH8102) GN prfB PE 3 SV 1
blastp_uniprot_sprot sp|Q8NS78|RF2_CORGL 82 197 + 116 Gaps:4 30.43 368 41.07 1e-16 Peptide chain release factor 2 OS Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN prfB PE 3 SV 1
blastp_uniprot_sprot sp|A4QCD3|RF2_CORGB 82 197 + 116 Gaps:4 30.43 368 41.07 1e-16 Peptide chain release factor 2 OS Corynebacterium glutamicum (strain R) GN prfB PE 3 SV 1
blastp_uniprot_sprot sp|A8M3R1|RF2_SALAI 56 197 + 142 Gaps:5 36.73 373 36.50 7e-16 Peptide chain release factor 2 OS Salinispora arenicola (strain CNS-205) GN prfB PE 3 SV 1
blastp_uniprot_sprot sp|C4L5K9|RF2_EXISA 61 198 + 138 Gaps:2 37.16 366 32.35 7e-16 Peptide chain release factor 2 OS Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN prfB PE 3 SV 1
blastp_uniprot_sprot sp|B8HBH8|RF2_ARTCA 54 197 + 144 Gaps:9 36.39 371 37.04 3e-15 Peptide chain release factor 2 OS Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN prfB PE 3 SV 1
blastp_uniprot_sprot sp|A4X3K6|RF2_SALTO 56 197 + 142 Gaps:5 36.73 373 35.77 4e-15 Peptide chain release factor 2 OS Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN prfB PE 3 SV 1
blastp_uniprot_sprot sp|A0JYC5|RF2_ARTS2 57 197 + 141 Gaps:5 36.66 371 33.09 1e-14 Peptide chain release factor 2 OS Arthrobacter sp. (strain FB24) GN prfB PE 3 SV 1
rpsblast_cdd gnl|CDD|179072 59 198 + 140 Gaps:2 37.60 367 35.51 5e-28 PRK00578 prfB peptide chain release factor 2 Validated.
rpsblast_cdd gnl|CDD|211537 57 198 + 142 Gaps:2 38.46 364 30.00 4e-19 TIGR00020 prfB peptide chain release factor 2. In many but not all taxa there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a PFAM HMM called "RF-1" for the superfamily of RF-1 RF-2 mitochondrial RF-H etc.
rpsblast_cdd gnl|CDD|180152 97 198 + 102 Gaps:3 30.46 325 33.33 2e-13 PRK05589 PRK05589 peptide chain release factor 2 Provisional.
rpsblast_cdd gnl|CDD|168914 94 198 + 105 Gaps:2 30.38 339 31.07 4e-11 PRK07342 PRK07342 peptide chain release factor 2 Provisional.
rpsblast_cdd gnl|CDD|75726 98 198 + 101 Gaps:2 30.37 326 34.34 2e-09 PRK06746 PRK06746 peptide chain release factor 2 Provisional.

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 81 199 119 PTHR11075:SF46 none none none
SUPERFAMILY 84 199 116 SSF75620 none none none
Phobius 11 22 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 31 39 9 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 143 199 57 PF03462 none PCRF domain IPR005139
Phobius 23 30 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 30 30 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 62 217 156 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 40 61 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 81 199 119 PTHR11075 none none none
Coils 152 173 22 Coil none none none
Phobius 1 10 10 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Gene3D 61 171 111 G3DSA:1.20.58.410 none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 28   Secretory pathway 1 0.951 0.037 NON-PLANT 28