| |
Date |
Topic |
| Event |
April 14-15th 2010 |
Second training session : Talend Open Studio : Presentation ans advanced use of this ETL framework (Extract Transformation Load), an open source data integration solution. This first session |
| Event |
March 16-17th 2010 |
Second training session: Extrem programming : Agile days at URGI, eXtreme Programming training. |
| |
March 12th 2010 |
2 new fungex private databanks : Microbotryum violaceae sp. slatifolia sex chr A and B scaffolds are available now throw Blast |
| |
March 12th 2010 |
The grapevine genome 12X : The draft sequence and its annotations are available with GBrowse  |
| |
March 12th 2010 |
2 new public databanks : Brassica all DNA 2010 march 09 and Arabidopsis thaliana TAIR v9 all chromosomes are available now throw Blast |
| |
March 9th 2010 |
GnpIS : The 1.5.7 version is now available with new indexed data : L. maculans and its functional annotations.
|
| Event |
march 1st 2010 |
Publication : E. Permal and H. Quesneville co-writer in the new publication of The International Aphid Genomics Consortium : Genome Sequence of the Pea Aphid Acyrthosiphon pisum" in PLoS Biology. To see article
|
| Event |
Febuary 23- 25th 2010 |
First training session : Talend Open Studio : Presentation ans advanced use of this ETL framework (Extract Transformation Load), an open source data integration solution. This first session |
| Event |
Febuary 2nd - 3rd 2010 |
Rencontre ALPHY : During the workgroup of comparative genomics "Génomique Evolutive, Bioinformatique, Alignement et Phylogénie", Timothée Flutre talks about: "Rise and fall of structural variants among transposable element families in sequenced genomes".
|
| Event |
Febuary 1 2010 |
2 Newcomers : The team welcomes two nowcomers :
|
| Event |
Febuary 1-3rd 2010 |
Training session : Agile days at URGI, eXtreme Programming training. |
| |
January 26th 2010 |
REPET : The release 1.3.6 of this pipeline is now available and contact us to obtain it. |
| |
January 20th 2010 |
GnpMap : New poplar QTLs are now available with GnpMap . About Populus deltoides and trichocarpa, the new QTLs are on the
pop2_Populustrichocarpa_16042009 and pop2_Populusdeltoides_16042009 maps. |
| |
January 20th 2010 |
GnpMap : New cotton maps are now available with GnpMap . these maps are : GV_RIL and GV_cons GV_cons is a consensus map). |
| Event |
January 18th 2010 |
GnpSNP project CSU : The next CSU (meeting of the users of GnpSNP) of GnpSNP project is organized at INRA of Paris center. |
| |
January 15th 2010 |
MetaQTL project : The web page of this project is now online, it presents the aim and the partners engaged. |
| Event |
January 14th 2010 |
Ephesis project CSU : The 2010 first quarter meeting of the Ephesis project will be held in Paris. |
| Event |
January 9th - 13th 2010 |
PAG XVIII Conference : The Plant and Animal Genome XVIII Conference, Town & Country Convention Center in San Diego, California, USA. Two URGI posters were presented: - "Wheat genomic data in GnpIS, the URGI Information System." by Michaël Alaux
- "REPET: pipelines for the identification and annotation of transposable elements in genomic sequences." by Timothée Flutre
|
| |
January 13th 2010 |
Parsers for GnpSNP exchange formats : tools are available on our website to ease the data submission: - The last version of the SSR excel format parser allows to generate all the files of the SSR exchange format with a simple excel format in input. You also find a template of this input format.
- The version 0.5 of GenalysToUrgi parser that generate all the non-static files of the SNP/Indels exchange format using a Genalys excel output.
|
| Event |
January 12th 2010 |
PAG XVIII Conference : The Plant and Animal Genome XVIII Conference, Town & Country Convention Center in San Diego, California, USA. In the workshop 'IWGSC Physical Mapping Standard Protocol', Michaël Alaux talks about : "Wheat mapping and annotation data at URGI" during the 'Databases and online tools for displaying the anchored physical maps' session.
|
| Event |
January 11th 2010 |
PAG XVIII Conference : The Plant and Animal Genome XVIII Conference, Town & Country Convention Center in San Diego, California, USA. Hadi Quesneville, invited speaker, talks about : "When repeats meet chromatin: Relationship between repeats and heterochromatin dynamics" during the 'Transposable elements' workshop.
|
| |
January 7th 2010 |
Features of the year 2009 in GnpSNP : The last versions allowed many improvements: - Developpement of the interoperability with the genetic ressources system (Siregal).
- Improvement of the interoperability with GnpGenome.
- Integration of SSR Data.
- Improvement of the management of multi-taxons experiments.
|
| |
January 7th 2010 |
GnpSNP : The 1.8.8 version is now available
|
| Event |
December 2009 |
Publication : J. Amselem co-writer in the new publication : Hunting down fungal secretomes using liquid-phase IEF prior to high resolution 2-DE" in Electrophoresis revue. Abstract
|
| |
December 11th 2009 |
GnpIS : The 1.5.6 version is now available with new indexed data : L. maculans on private portal.
|
| |
December 9th 2009 |
GnpSNP : The 1.8.7 version is now available
|
| |
December 4th 2009 |
MUSCARES project : The web page of this project is now online, it presents the aim and the partners engaged. |
| |
December 3th 2009 |
Galaxy : On our platform, the galaxy tool is now available This genomic analysis tool is setup with Biomart datasets, the advanced search tool. Galaxy is also available on GnpIS portal.
|
| |
November 27th 2009 |
GnpIS : The 1.5.5 version is now available
|
| |
November 27th 2009 |
GnpArray : The 1.8.3 version is now available,
|
| Event |
November 16th 2009 |
ISYIP 2009 : The 1st International Workshop on "Information SYstems for Insect Pests" (ISYIP), INRIA, Rennes, France. Hadi Quesneville, invited speaker, talks about : "The URGI bioinformatic platform: an original information system to bridge genetic and genomic plant and fungal data".
|
| Event |
November 12th - 13th 2009 |
GDR BIM 2009 Annual Conference : The "GDR Bioinformatique Mol´culaire" (GDR BIM) conference, Institut Henri Poincar´ in Paris, France. Hadi Quesneville, invited speaker, talks about : "Genomes and transposable elements".
|
| |
November 20th 2009 |
GnpMap : Seven new grape genetic maps are now available with GnpMap : Syrah_080717, Grenache_080717, SG_080717, Chardonnay_080717, Bianca_080717, ChBi_080717 and Integrated_2_080717 |
| |
November 16th 2009 |
GrapeReSeq project : The web page of this project is now online, it presents the aim and the partners engaged. |
| |
November 16th 2009 |
Triticum project : The 3B chromosome deletion bins are now available |
| |
November 11th 2009 |
GnpSNP : The 1.8.6 version is now available
|
| Event |
November 9th - 13th 2009 |
TDWG 2009 Annual Conference : The Biodiversity Information Standards (TDWG) conference presents e-knowledge about biodiversity and agriculture, in Montpellier, France. Two URGI posters were presented: - "SIReGal: The INRA Plant Genetic Ressources Information System." by Sophie Durand
- "Ephesis: Environment and Phenotypes Information System, a GnpIS module." by Cyril Pommier
|
| |
October 30th 2009 |
GnpIS : The 1.5.4 version is now available
|
| Event |
October 7th - 10th 2009 |
PlantGEM 2009 : The 8th Plant Genomics European Meeting was held in Lisbon, Portugal. Three URGI posters were presented: - "The URGI grape genome manual annotation distributed system" by Nathalie Choisne
- "GnpIS update: two new query tools to bridge plant genetics and genomics data" by Delphine Steinbach
- "GnpIS: Focus on wheat genomic data" by Michael Alaux
|
| |
October 15th 2009 |
GnpIS : The 1.5.3 version is now available
|
| |
October 15th 2009 |
GnpMap : Seven new wheat maps are now available with GnpMap
Concerning Triticum aestivum, the new maps are : AXO_050428, CtCs_040630, RER_050614, ReCS_090305, SumStoa_090225, TXO_050621 and TaVirtualPop02_090219.
|
| |
October 9th 2009 |
GnpMap : The 2.5.2 version is now available,
|
| |
October 6th 2009 |
GnpSNP : The 1.8.5 version is now available,
|
| |
October 5th 2009 |
The grapevine genome 12X : The draft sequence and its annotations are available with GBrowse
|
| Event |
October 3rd - 4th 2009 |
First StatSeq workshop : The first workshop for the StatSeq about the challenges of 1000 plants sequenced was held in Barcelona. One URGI poster was presented by Matthias Zytnicki. |
| |
October 1st 2009 |
SIReGal : The 1.4.1 version is now available, ,more... |
| |
October 1st 2009 |
GnpArray : The 1.8.2 version is now available,
|
| |
september 29th 2009 |
GnpSNP : The 1.8.4 version is now available, , more...
|
| |
September 29th 2009 |
SIReGal : The 1.4 version is now available, ,more... |
| |
september 4th 2009 |
GnpIS : The 1.5.1 version is now available including the genome of Botrytis cinerae in the
indexed data , more... |
| |
september 3th 2009 |
GnpSNP : The 1.8.2 version is now available, , more...
|
| Event |
September 23th 2009 |
Ephesis : The second 2009 User comitee of the Ephesis project will be held on the
23th of septembre by videoconference. It will be focused on user
feedback regarding version 1.0 Beta of Ephesis and data flows. |
| Event |
August 30th -
September 4th 2009 |
the 19th ITMI conference : During the 19th International Triticeae
Mapping Initiative, two URGI talks are presented: - "REPET: pipelines for the identification and
annotation of transposable elements in genomic sequences" by Timothée Flutre
- "Wheat data on GnpIS, the INRA URGI information system" by Michael Alaux
|
| |
August 28th 2009 |
GnpSNP : New Poplar polymorphism data added in GnpSNP for VTP Project.
Polymorphism detection for association genetic studies. VTP Project (restricted access) |
| |
August 28th 2009 |
GnpSNP : New maize SSR data added in GnpSNP for CP1 Challenge Program Project.
Study of maize diversity over the world. CP1 Project (restricted access) |
| |
August 21th 2009 |
GnpIS : The 1.5 version is now available , more... |
| |
August 21th 2009 |
GnpArray : The 1.8.1 version is now available, , more...
|
| |
July 8th 2009 |
GnpSNP : The 1.8.2 version is now available, , more...
|
| |
July 7th 2009 |
GnpArray : The 1.8 version is now available, more... |
| |
July 3td 2009 |
SIReGal : The 1.3.2 version is now available, more... |
| Event |
July 2nd 2009 |
CNET : 2 URGI talks : "Comparative analysis of transposable elements in several fungal genomes" by J. Amselem and "Transcriptional profile heterochromatin: impact of transposable elements" by M. Zytnicki |
| |
June 29th 2009 |
GnpMap : The 2.3.1 version is now available, more... |
| |
June 18th 2009 |
GnpGenome Grape : new track available on the 8X GBrowser : Oligoset V1.0 Qiagen for example |
| |
June 9th 2009 |
Siregal : The 1.3 version is now available : test the simplified query form and see accession pictures. |
| |
June 11th 2009 |
GnpIS : The 1.4 version is now available, more... |
| Event |
June 30th 2009 |
Steering committee : The next steering committee for Siregal and Ephesis projects is organized at URGI |
| Event |
June 16th 2009 |
Siregal project CSU : The next CSU (Comité Scientifique des Utilisateurs) for Siregal project is organized at INRA Avignon center. |
| Event |
June 2nd 2009 |
URGI platform CSU : The next CSU (Comité Scientifique des Utilisateurs) is organized at Ivry-sur-Seine. URGI will present to users (at least one person per species, thematic and main project in collaboration) the platform activity and its projects report. |
| Event |
May 19th and 29 2009 |
Training to LabKey software : Doriane company organize a training to LabKey software, opened to Siregal, Ephesis and CRB users. |
| |
May 19th 2009 |
New poplar genetic maps : Available in GnpMap (restricted to Poplar community : INRA Evry, Orleans), Collab V. Jorge and for interoperability GnpIntegr project |
| |
May 19th 2009 |
6 new grape genetic maps : Available in GnpMap (restricted to Grape community, collab N. Choisne & AF Adam-Blondon for GrapeSeq and interoperability projects |
| |
May 19th 2009 |
New tools list : The new softwares list presents analysis tools on our public and secure servers |
| |
May 15th 2009 |
URGI activity : The GnpIS databases surveys sent to INRA DSPPV (Direction Scientifique Plantes et Produits du Végétal) |
| |
May 15th 2009 |
GnpGenome : The poplar genome release 1, developed in the framework of ANR GnpInteGR and interoperability projects, is available on our secure server, collab I. Bourgait & V. Jorge (INRA Orléans), P. Faivre-Rampant (INRA Evry) for ANR GnpInteGR and interoperability projects |
| Event |
May 12th 2009 |
Ephesis project CSU : The next CSU for Ephesis project is organized. |
| |
May 11th 2009 |
New user account form : Use the new form to ask an account to our web secure server gpi. IP adress is not necessary anymore to this server. |
| |
May 5th 2009 |
GnpSNP : On our secure server, new tomato SNPs data in GnpSNP database, collab N. Ranc (INRA Avignon). |
| |
May 4th 2009 |
GnpSNP : On our secure server, new wheat SNPs (locus FHB) in GnpSNP database, collab C. Ravel (INRA Clermont-Ferrand) for interoperability project |
| |
April 2009 |
Quality at URGI : In the frame of URGI management system, the quality procedures are write and available to every one in the team (goal: certification ISO 9001) |
| |
April 1st 2009 |
Public Release of Botrytis cinerea T4 genome : Botrytis cinerea T4 genome annotations are now available. Explore structural genome annotation on GnpGenome and functional annotation using pAscoDB |
| |
March 20th 2009 |
URGI web site : The new databanks page presents the 30 databanks hosted on our public server and the 325 databanks hosted on our secure server. |
| Event |
March 19th 2009 |
Transmit science to the youth ! : Following the call from the association Paris-Montagne and its program Science Academie , we decided to join the labs that were already part of the adventure. Thus we will welcome a couple of high school students during the holidays (end of April) to show them the kind of research we are doing. We prepared several topics to discuss as well as some specific cases on which they will work. Our aim is to share with them our knowledge about genome structure, function and evolution, and to be able to answer their questions as far as we can... ;-) We also diffused the information about this initiative to the other labs from the INRA research center at Versailles. If you are interested, don't hesitate to propose a short internship ! |
| Event |
March 13th 2009 |
URGI opening party : URGI came in INRA Versailles center july 2008. To celebrate its arrival, the team invites their partners and colleagues and presentes their offices. |
| Event |
March 10th 2009 |
URGI job annoucements : URGI offers 2 permanent INRA positions |
| |
March 6th 2009 |
GnpMap : On our secure server, new wheat genetic maps are available, collab P. Leroy (INRA Clermont-Ferrand) for Genoplante BIEP project |
| Event |
March 4th - 6th 2009 |
Cost project: training session : For the project partners, this workshop subject is the curation of 12X version of Vitis vinifera cv PN40024 automatic annotation. |
| |
Feb 28th 2009 |
GnpIS new version 1.3 : |
| |
Feb 27th 2009 |
New tool : SRS : On our secure server, the tool SRS 83 is available with main public databases. If you need more information contact us at urgi-support[@]versailles.inra.fr |
| |
Feb 27th 2009 |
GnpMap : On our secure server, insertion of a new wheat genetic map SumStoa_090225, collab: P. Leroy, for ANR Genoplante BIEP project and interoperability project |
| Event |
Jan 30th 2009 |
PAG 2009, URGI demo and posters : The online demo of "GnpIS, the plant information system of INRA URGI bioinformatics platform" presented at PAG 2009 San Diego is available: part1 and part2.
The posters are available here. |
| |
Jan 27th 2009 |
GnpIS data portal is now available : New version 1.2 of this portal presents the quick search tool on public genetic and genomic informations.
With a secured account, this tool also search private information at https://gpi.versailles.inra.fr/gnpis. The GnpIS portal also gives access to the Gnp tools |
| Event |
Jan 15th 2009 |
URGI web site : New major version of URGI public web site: navigation and content. |
| Event |
Jan 9th 2009 |
Forum des labos, INRA Versailles : URGI organized a meeting about Bioinformatics. The document is available here (pdf file). of Hadi Quesneville, his talk begins at the 13th minute of the clip. |
| |
December 2008 |
URGI organisation : Agile methodology implementation for ongoing GnpIS developments |
| |
December 2008 |
Quality at URGI : Self evaluation URGI quality done for INRA (goal: certification ISO 9001) |
| |
Dec 4th 2008 |
Rename of the Tritipol Grape version as VitiSP (on private site) : Sequence manager (chromatograms), cleaning, base calling, primers storage, experimental conditions, polymorphism detection |
| Event |
Dec 4th 2008 |
Tool demo : GenAlys parser and data SNP procedure to MIPS, collab Manuel TriticaeGenome project |
| |
Nov 30th 2008 |
New analysis tool for SNP detection: Polymorfind : This tool is available on command line on our private server, collab S. Gaillard (INRA Angers) for SNPGrapeMap project. The pipeline Polymorfind is based on Phred, Phrap, Consed, Polyscan Suite: See documentation on author page |
| |
Nov 28th 2008 |
GnpSNP : New data added in GnpSNP for ADOC Project (GCP 2006-02) of GCP challenge.The polymorphism data of 284 barley (Hordeum vulgare) lines for 10 genes are available.A dataset on allele diversity at orthologous candidate genes in GCP crops. |
| |
Oct 23th 2008 |
GnpSNP : New data added in GnpSNP for ADOC Project (GCP 2006-02) of GCP challenge.The polymorphism data of 275 rice (Oryza sativa) lines for 30 genes are available.A dataset on allele diversity at orthologous candidate genes in GCP crops.
See details about the project (restricted access) |
| |
Oct 2th 2008 |
GnpGenome Grape - new track available: BAC (BES mapping) : The new track on the Grape gbrowse is the computed BAC positions from BES mapping. |
| |
Sept 13th 2008 |
GnpGenome Grape - new tracks available: Markers and Transposable Elements : The new tracks on the Grape gbrowse are markers with links to GnpMap and transposable elements from IGA (Istituto di Genomica Applicata). |
| |
Aug 22th 2008 |
GnpSNP : New data added in GnpSNP for GENOQB Project (Pinus Pinaster).
Polymorphisms associated with Pinus pinaster PpCOBRA3 and Chalcone Synthase genes (3 batches) on 39 accessions are available. See results for PpCOBRA3 or one batch about Chalcone Synthase |
| |
June 19th 2008 |
URGI new location : URGI unit will move to INRA Centre de Versailles (batiment 18) on 27 June 2008, ***servers will be shut down for at least one day*** |
| |
June 2nd 2008 |
Siregal project : Siregal is now available on the URGI public web site. |
| |
May 22th 2008 |
GnpSNP project : For news about URGI polymorphism project |
| |
May 22th 2008 |
Siregal project : For news about ressource genetic project |
| |
May 21th 2008 |
GnpMap project : New data in GnpMap database : 7 maps for Triticum aestivum |
| |
Feb 5th 2008 |
GnpGenome : Oryza sativa spp indica and its annotation from BGI (Beijing Genomics Institute) now available on GnpGenome. |
| |
Jan 22nd 2008 |
GnpGenome : New release of rice japonica integrated database with TIGR v4 annotation and data from Bayer (BIEP Genoplante project) |
| |
Jan 21st 2008 |
Secure Account : INRA URGI hosts also a Secure server with much more tools, data and computational power. New: ask online for an INRA URGI Secure account! |
| |
Dec 6rd 2007 |
GnpGenome : Arabidopsis TAIR v7 annotations now available on GBrowse.
Also available :** Transposable Element annotation** Tiling array results** Chromosome 4 recombinaison rate |
| |
Dec 3rd 2007 |
urgi-training : A new mailing list (urgi-training@listes.inra.fr) dedicated to give information on URGI training courses is opened to registration on http://listes.inra.fr/wws |
| |
Dec 3rd 2007 |
GnpGenome : Grapevine version 1 (8X) genome assembly with CNS-Genoscope automatic annotations is now available |
| |
Nov 20th 2007 |
Server shutdown : WARNING: a 2 hours electric interruption is planned on Saturday morning, 24th at Evry2 tower. All URGI servers will be halted on Friday evening, Nov 23rd 2007. |
| |
November 12th 2007 |
Training : Due to problems of railways (strike) the SNP training session which was initially planned november the 15th is postponed to the 12 of december |
| |
October 26th 2007 |
Training : SNP training session is open for registration |
| |
September 14th 2007 |
CMap : CMap tool with Grape maps (genetic, physical and genome golden path) is available |
| |
August 27th 2007 |
Grape genome publication in Nature : The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.**Full text is already readable in AOP (Advance online publication). |
| |
July 26th 2007 |
GnpSeq : Myzus persicae clustering v3 (9871 contigs) is available on GnpSeq. |
| |
June 7th 2007 |
GnpMap : 3 new Grape genetic maps are availaible : DG_F_CS, DG_M_H2 and DG_Integrated. |
| |
June 5th 2007 |
Welcome : Welcome to Hadi Quesneville, new director of INRA URGI since 1st June of 2007 |
| |
May 21th |
GnpSNP : New data added in GnpSNP: 812 polymorphism sequences found on 29 tree accessions for Gene PpMyb14 |
| |
May 10th 2007 |
Secure server : The URGI secure server was down from May 8th to 10th : It currently runs with less memory and CPU. URGI and Sun microsystem are investigating the problem, probably a hardware failure due to last week's power cut. |
| |
May 4th 2007 |
Secure server OK : The URGI secure server went down this afternoon : 1 failed CPU and 1 failed memory DIMM were replaced. |
| |
May 3rd 2007 |
Servers Unavailability : Our servers went down on monday, april 30th. A massive EDF breakdown occured in Evry. Our secure server is still impacted an will be rebooted during the week. |
| |
December 20th 2006 |
GnpMap : Grape anchoring data are available: Anchoring projects (CI2001002, VVPM), Pool sets (VVCS1, VVCS2) and Pool project VVPM, with 3357 individual anchored clones, 232852 pool results and 31832 cross-references. |
| |
December 20th 2006 |
GnpMap : The new GnpMap 2.1 and GnpSeq 2.1 are available. GnpMap is now supporting anchoring data. i.e. marker on individual clone, pool experiments and in silico mapping. A new cross-reference query interface is available with markers, sequences and clones, and links to GnpSeq, genbank and other databases. |
| |
December 12th 2006 |
GnpArray : GnpArray 1.6 is out. GnpArray is part of the GnpIS platform. |
| |
December 12th 2006 |
GnpSNP : GnpSNP 1.5 is out. GnpSNP is part of the GnpIS platform. |
| |
December 5th 2006 |
Network : Network trouble is over. A bad optical fiber link has been found and replaced. Network disconnection and unavailability should not occur anymore. |
| |
October 11th 2006 |
GnpMap : The whole Maize maps (previously in GnpMapMaize) are now integrated in GnpMap. |
| |
August 2nd 2006 |
Vitis Project : The International Grape Genome Program (IGGP, launched in 2001) aims at organizing the sequencing of the whole grapevine genome and at coordinating the international efforts for the development of genomic resources for the Vitis genus. |
| |
July 28th 2006 |
GnpSNP : A new GnpIS module is available. GnpSNP :a database and interface for storing polymorphism. See the data summary. |
| |
July 25th 2006 |
GeneFarm : 13th release of the GeneFarm application : 4929 genes entries and 461 families entries. |
| |
July 25th 2006 |
Web Site : Following the network update, our server's name have changed, please note this new URL: http://urgi.versailles.inra.fr |
| |
June 2nd 2006 |
GnpArray : The version 1.5 of GnpArray has been released. |
| |
May 15th 2006 |
GeneFarm : 12th release of the GeneFarm application : 4613 genes entries and 459 families entries. |
| |
April 11th 2006 |
GnpSeq : Acyrthosiphon pisum clustering v5 Annotations are available on GnpSeq. |
| |
March 30th 2006 |
Blast Server : Myzus persicae clustering v1 is available in the Blast server. |
| |
March 30th 2006 |
Blast Server : Toxoptera citricida clustering v1 is available in the Blast server. |
| |
March 30th 2006 |
GnpSeq : Toxoptera citricida clustering v1 (2203 contigs) is available on GnpSeq. |
| |
March 30th 2006 |
GnpSeq : Myzus persicae clustering v1 (2547 contigs) is available on GnpSeq. |
| |
March 30th 2006 |
GnpSeq : Acyrthosiphon pisum clustering v5 (17069 contigs) is available on GnpSeq. |
| |
March 30th 2006 |
Blast Server : Acyrthosiphon pisum clustering v5 is available in the Blast server. |
| |
March 28th 2006 |
Blast Server : Aphis gossypii clustering v1 is available in the Blast server. |
| |
March 28th 2006 |
GnpSeq : Aphis gossypii clustering v1 (3696 contigs) is available on GnpSeq. |
| |
March 22th 2006 |
GnpSeq : New Aphid sequences: Aphis gossypii (8241 EST, 24 mRNA), Myzus persicae (5772 EST, 16 mRNA), Toxoptera citricida (45 mRNA) are available on GnpSeq. |
| |
March 2nd 2006 |
Contact : URGI emails change. Please note our new contact address : urgi-contact@versailles.inra.fr and update your address book. |
| |
February 21th 2006 |
GnpArray : A new project -AFGBC STUDY OF BOTRYTIS CINEREA FUNCTIONAL GENOMICS- is now available on GnpArray. |
| |
February 21th 2006 |
GnpArray : A new GnpIS module is available. The transcriptome database and interface for microarray experiment results following MIAME/MAGE-ML recommendations is open. See the data summary. |
| |
February 15th 2006 |
GnpSeq : Strawberry clustering v1 Annotations are available on GnpSeq. |
| |
February 6th 2006 |
GnpSeq : Strawberry clustering v1 (6546 contigs) is available on GnpSeq. |
| |
February 3rd 2006 |
GnpSeq : public Strawberry sequences (9398 EST and 262 mRNA) are available on GnpSeq. |
| |
February 2nd 2006 |
Conference : Slides presented to the Plant Polymorphism conference in November are available for download. |
| |
January 31th 2006 |
Server maintenance : This server has been upgraded with faster and larger disks. |
| |
January 23th 2006 |
GnpGenome : A new GnpIS module is available. Whole genomes annotations data are now browsable on the GnpGenome interface. |
| |
January 11h 2006 |
GeneFarm : 11 th release of the GeneFarm application : 4417 genes entries and 408 families entries. |
| |
January 10th 2006 |
GnpSeq : Acyrthosiphon pisum clustering v4 (17106 contigs) is available on GnpSeq. |
| |
January 10th 2006 |
GnpMap : Wheat cytogenetic maps: DEL_050308 (17178 loci), Ditelo_050308 (880 loci), Nullitetra_050308 (1704 loci) are available on GnpMap. |
| |
January 5th 2006 |
GnpSeq : New Acyrthosiphon pisum sequences (7139 sequences) are available on GnpSeq. |
| |
January 2nd 2006 |
GnpProt : GnpProt, a database for proteomics data, is now on line |
| |
December 12th 2005 |
Web Site : We are currently migrating our web site. Tools and data available on will be installed on . |
| |
November 30th 2005 |
GnpSeq : Sorgho clustering v2 Annotations are available on GnpSeq. |
| |
November 29th 2005 |
TriAnnot : New release of the Triticeae Annotation Project. |
| |
November 8th 2005 |
GnpSeq : Medicago clustering v2 Annotations are available on GnpSeq. |
| |
November 7th 2005 |
GnpSeq : Sorgho clustering v2 (39391 contigs) is available on GnpSeq. |
| |
October 20th 2005 |
GnpMap : The new version of GnpMap with several species (Rice, Sorgho, Wheat, Grape) is available. |
| |
October 20th 2005 |
GnpMapMaize : The version of GnpMap available since April 2005, which countains some Maize maps, is now called GnpMapMaize. |
| |
October 13th 2005 |
GnpSeq : Medicago clustering v2 (39249 contigs) is available on GnpSeq. |
| |
October 11th 2005 |
GeneFarm : 10 th release of the GeneFarm application : 4053 genes entries and 381 families entries |
| |
September 14th 2005 |
GnpSeq : Acyrthosiphon pisum clustering v3 Annotations are available on GnpSeq. |
| |
September 14th 2005 |
GnpSeq : New public Rice sequences (15719 EST) are available on GnpSeq. |
| |
September 14th 2005 |
GnpSeq : New public Sorghum sequences (46542 EST and 16 mRNA) are available on GnpSeq. |
| |
September 14th 2005 |
GnpSeq : New public Medicago sequences (30671EST and 54 mRNA) are available on GnpSeq. |
| |
September 7th 2005 |
GnpSeq : Acyrthosiphon pisum clustering v3 (13350 contigs) is available on GnpSeq. |
| |
August 26th 2005 |
GnpSeq : New public Rice sequences (110095 EST and 546 mRNA) are available on GnpSeq. |
| |
August 17th 2005 |
GnpSeq : New public Pea sequences (104 mRNA) are available on GnpSeq |
| |
August 16th 2005 |
GnpSeq : New public Sunflower sequences (1690 EST and 71 mRNA) are available on GnpSeq |
| |
August 9th 2005 |
GnpSeq : New public Rape sequences (26399 EST and 195 mRNA) are available on GnpSeq |
| |
August 9th 2005 |
GnpSeq : New Acyrthosiphon pisum sequences (9326 sequences from library ID0AFF and ID0AAG) are available on GnpSeq |
| |
August 4th 2005 |
BioFloWeb : Highly configurable tool to retrieve various information from web services. This application displays a gene report for A. thaliana, which contains data provided by Planet BioMoby web services. |
| |
July 21th 2005 |
GeneFarm : New release of the GeneFarm application : 3952 genes entries and 364 families entries, next release planned in october 2005. |
| |
June 16th 2005 |
GnpSeq : Rosa clustering v1 Annotations are available on GnpSeq |
| |
June 6th 2005 |
GnpSeq : Rosa clustering v1 (4765 contigs) is available on GnpSeq |
| |
May 27th 2005 |
Server interruption : Due to UPS (Uninterruptible Power Supply) failure, our servers and network went down. |
| |
May 24th 2005 |
GnpSeq : Acyrthosiphon pisum public clustering v2 Annotations are available on GnpSeq |
| |
May 24th 2005 |
GnpSeq : Phytophthora public clustering v1 Annotations are available on GnpSeq |
| |
May 24th 2005 |
GnpSeq : Public Rosa EST (5305 sequences) are available on GnpSeq |
| |
May 24th 2005 |
GnpSeq : Public Rosa mRNA (23 sequences) are available on GnpSeq |
| |
May 24th 2005 |
GnpSeq : Maize EST from INRA maize kernel splitting project (5 sequences) are available on GnpSeq |
| |
May 24th 2005 |
GnpSeq : Public Helianthus arghopyllus EST (12787 sequences) are available on GnpSeq |
| |
May 24th 2005 |
GnpSeq : Public Helianthus paradoxus EST (10340 sequences) are available on GnpSeq |
| |
May 24th 2005 |
GnpSeq : Maize embryo EST from UMR5667-PREST03 project (3116 sequences) are available on GnpSeq |
| |
April 28th 2005 |
GnpMap : GnpMap, the new mapping module of the URGI information system, is now on line (read more about this module here).A new update is planned to be done before the end of May with more maize data and more species. |
| |
April 11th 2005 |
GeneFarm : New release of the GeneFarm application : 3651 genes entries and 336 families entries |
| |
March 31th 2005 |
GnpSeq : Grape Clustering v1 Annotations are available on GnpSeq |
| |
March 30th 2005 |
GnpSeq : Wheat Clustering v1 Annotations are available on GnpSeq |
| |
March 29th 2005 |
GnpSeq : Sorgho Clustering v1 Annotations are available on GnpSeq |
| |
March 29th 2005 |
GnpSeq : Medicago Clustering v1 Annotations are available on GnpSeq |
| |
March 22th 2005 |
GnpSeq : Arabidopsis thaliana Clustering v1 Annotations are available on GnpSeq |
| |
March 15th 2005 |
Blast server : Arabidopsis thaliana public clustering v1 is available on the Blast server |
| |
March 15th 2005 |
Blast server : Medicago public clustering v1 is available on the Blast server |
| |
March 15th 2005 |
Blast server : Sorgho public clustering v1 is available on the Blast server |
| |
March 15th 2005 |
Blast server : Grape public clustering v1 is available on the Blast server |
| |
March 15th 2005 |
Blast server : Wheat public clustering v1 is available on the Blast server |
| |
March 15th 2005 |
Blast server : Maize public clustering v1 is available on the Blast server |
| |
March 14th 2005 |
TriAnnot project : Page describing this project and data download have been added |
| |
March 7th 2005 |
Aphid project : Page about this project has been added |
| |
February 10th 2005 |
Gene Report : A customizable Gene Report, using the bioMoby engine in order to gather A. thaliana annotations from different data sources, such as MIPS, NASC, or AtiDB. |
| |
February 10th 2005 |
Planet project : Page about this project has been added |
| |
January 17th 2005 |
GnpSeq : Grape public clustering v1 (23 468 contigs) is available on GnpSeq |
| |
January 14th 2005 |
GeneFarm : New release of the GeneFarm application : 3213 genes entries and 297 families entries |
| |
January 1st 2005 |
FLAGdb++ : FLAGdb++ is no longer maintained on the GPi platform.You can find the last version of FLAGdb++ (2.0) on the URGV web site, here. |
| |
December 09th 2004 |
GnpSeq : Acyrthosiphon pisum public clustering v2 (12 082 contigs) is available on GnpSeq |
| |
November 09th 2004 |
GnpSeq : Phytophthora public clustering v1 (1 954 contigs) is available on GnpSeq |
| |
September 2004 |
Public web site : New version of our public web site. |
| |
August 13th 2004 |
GnpSeq : Sorgho public clustering v1 (36 874 contigs) is available on GnpSeq |
| |
July 23th 2004 |
GnpSeq : Medicago public clustering v1 (36 669 contigs) is available on GnpSeq |
| |
July 23th 2004 |
GnpSeq : Arabidopsis thaliana public clustering v1 (32 131 contigs) is available on GnpSeq |
| |
July 19th 2004 |
GnpSeq : Wheat public clustering v1 (104 454 contigs) is available on GnpSeq |
| |
July 09th 2004 |
GnpSeq : Acyrthosiphon pisum public clustering v1 (6 541 contigs) is available on GnpSeq |
| |
July 2004 |
GnpSeq : Update of GnpSeq module sequence database (previously named GPiDB). |
| |
March 2004 |
BioMercator : A new tool for map data visualization BioMercator is available |
| |
03 March 2004 |
GeneFarm : GeneFarm project Structural and functionnal annotation of Arabidopsis thaliana gene and protein families by a network of experts is on line |
| |
12 Jan 2004 |
FLAGDB++ : Data update for FLAGDB++ application |
| |
2 Dec 2003 |
ADEL : ADEL, a tool for analysis of distribution of ESTs in cDNA libraries, is now available. |
| |
12 Nov 2003 |
FLAGdb++ : New release V1.4 of FLAGdb++ data and application |
| |
19 July 2003 |
Phytoprot : Phytoprot an "all-by-all" comparison of plant protein sequences is open |
| |
30 June 2003 |
Predotar v1.03 : Predotar v1.03 is online |
| |
25 April 2003 |
SPADS software 1.2.0 : new version of GENOPLANTE SPADS software 1.2.0; now supports Genbank format |
| |
1st April 2003 |
Projects : Genoplante summary available resssources Projects |
| |
21 March 2003 |
ATOME : ATOME Presentation of Arabidopsis Orfeome project |
| |
21 March 2003 |
GOP-T4 : GOP-T4 rapeseed snp project data are available |
| |
21 March 2003 |
FLAGdb++ v1.21 : a new release (9th) of FST data (14658) is available through FLAGdb Web interface or through FLAGdb++ v1.21 application |
| |
17 March 2003 |
FLAGdb++ : FLAGdb++ (integration and exploration application around the Arabidopsis genome) is online |
| |
18 Feb 2003 |
SPADS software 1.1.5 : new version of GENOPLANTE SPADS software 1.1.5 |
| |
14 Feb 2003 |
SAGE : SAGE Project tags from a columbia root library |
| |
14 Feb 2003 |
PlantGene : Access to PlantGene data project (Library of plant genes with cognate full-length cDNA) |
| |
20 Dec 2002 |
FlagDB : The 8th release of FlagDB 12286 FST. |
| |
26 Sep 2002 |
GnpSeq : Insertion of Arabidopsis contigs in GnpSeq. |
| |
10 Sep 2002 |
EST : EST Genoplante Project of Arabidopsis cDNA library enriched in plasmalemma and tonoplast coding sequences 1281 EST |
| |
30 Aug 2002 |
FlagDB : The 7th release of FlagDB 9501 FST. |
| |
28/29 August 2002 |
GnpSeq : Insertion of public dbEST ESTs of Wheat, Pea, Sunflower, Colza and Rice. Rice ESTs from the Beijing Genomics Institute have been also integrated in GnpSeq. |
| |
15 August 2002 |
GnpSeq : Access to GnpSeq (Medicago and Sorghum ESTs contigs), wheat MTD EST (blast server), CATMA results, SPADS, Predotar. |
| |
29 May 2002 |
FlagDB : The 6th release of FlagDB 9108 FST. |
| |
12 Feb 2002 |
FlagDB : The 5th release of FlagDB |
| |
01 Nov 2001 |
FlagDB : The 4th release of FlagDB |
| |
01 Jul 2001 |
FlagDB : The first release of FlagDB Genoplante project of Arabidopsis insertion mutants flanking sequences, is now available. |
