Genomic sequences

• vein_scaffold.fsa.gz (9.50 MB) V. inaequalis Draft Supercontigs sequences (v1)
• Vevg_Avr_region.fsa.gz (99.79 kB) Vg Avr region (330Kb)
• vein_scaffold_v4.fsa.gz (18.70 MB) V. inaequalis v4 Supercontigs sequences
• vein_ctg_v4.fsa.gz (18.37 MB) V. inaequalis v4 contigs sequences (virtual contigs extracted from supercontigs after final assembly they are separated by gap of at least one nucleotide N)
• Vein_allest1.fsa.gz (9.81 MB) V. inaequalis v1 ESTs (38486 ESTs from
  • AQDA: V. inaequalis in vitro on Vogel
  • AQDB: V. inaequalis 10 days infection leaves
  • AQDC: V. inaequalis under carbon starvation
  • AQDD: V. inaequalis under nitrogen starvation

Genes

• Vein_scaffold_v4_egn1.genes.fa.gz (5.69 MB)  V. inaequalis v4 predicted genes (12558) 

• Vein_scaffold_v4_egn1.uncomp_genes.fa.gz (755.11 kB)  V. inaequalis v4 uncomplete predicted genes (1740) 

• Vein_CDSall_nuc.fsa.zip (4.39 MB)  V. inaequalis v4 predicted CDS (12558):
  It contains reliable (10426) and unreliable (2132) Eugene predicted CDS
  Vein_Pxxxxxx.1 : gene with length > 300 Nucl OR (gene with length < 300 aa with EST Evidence)
  Vein_uPxxxxxx.1 : gene with length < 300 aa without EST evidence (at the time of prediction pipeline)

• Vein_CDSall_prot.fsa.zip (2.80 MB)  V. inaequalis v4 predicted proteins (12558):
  It contains reliable (10426) and unreliable (2132) Eugene predicted protein
  Vein_Pxxxxxx.1 : protein with length > 100 aa OR (protein with length < 100 aa with EST Evidence)
  Vein_uPxxxxxx.1 : protein with length < 100 aa without EST evidence (at the time of prediction pipeline)

Annotation files

• Vein_scaffold_v4_egn1.gff.gz (1.51 MB)  GFF from Eugene prediction: complete genes (containing at least start to stop)

• Vein_scaffold_v4_egn1_uncomp_genes.gff.gz (196.48 kB)  GFF from Eugene prediction: uncomplete genes (prediction missing start or stop)

  Supplementary downloads

• vein_scaffold_v4.size.gz (14.71 kB)
• vein_ctg_v4.size.gz (45.86 kB)

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