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Blaster

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  • version: 2.24

Blaster


The BLASTER suite gathers C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. But we think that the tools are generic enough to be used in other contexts.

The suite is composed by three programs BLASTER, MATCHER and GROUPER. The results of BLASTER can be treated further by the MATCHER and GROUPER program, but these two last programs can be also used in conjunction with other programs such as RepeatMasker, CENSOR, BLAST, BLAT, ... if their outputs are correctly formated as a BLASTER output file (i.e. *.align).

See the

for more details.

The binaries are given with REPET .


Access mode(s):

Command line on gpi.versailles.inra.fr
Command line on saruman.versailles.inra.fr

Keyword(s):

transposable element, annotation, search, alignment, genome

Update: 02 Dec 2011
Creation date: 31 May 2011
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